rs30645641 SNP Detail

Summary

• ID
  rs30645641
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136379258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACGGTTTAT CTCTGAGGAG CTATCTCTGT TCTTTAGGTC
  TTGTCTCCTC TTATAAAAAG TACCTGTAGC CTTATTTGAT GCATATAGGA ATAGTCAGAG
  Y
  GGTCCTTTGG CATGCCTTGG CTTTTTCCTA CAGTTATCTT TATGGCTGTG ATCTGGCTTT
  TGCCGGATGA CAAATTGCTC TTTACAAATG ACTCTGTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45450792	mCV25268832	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	C
ss320974488	CHEV_3_136336461	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30645641					SNP	T	T	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136379258 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13862	CpG island 13862			1108 bp distal
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr585838	regulatory region 585838			994 bp distal
Rr585839	regulatory region 585839			621 bp proximal
Rr585840	regulatory region 585840			1036 bp proximal
Tssr31877	transcription start site region 31877			398 bp downstream