rs30647488 SNP Detail

Summary

• ID
  rs30647488
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122524742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTGAGCG CTCTCTCCAG
  CCCAGATATA CTCTAAGTAC CCAGCCCTCC TTTCACCTCC CACCCCCATT ATTAAGCCTT
  TCCCCATCAA ATTCTGAGCA TAGAGGGATC GGATGATAAC ACAGAAAGTA GAGCGGTTTC
  TTTTTAAAAC ATTACAGGAA GTTTGAGCCG AAGCACCAAG ACAGACCATC TCGACCTAGA
  W
  TTATCTTGCT GGGAACCACC AGTTTCCAGG GGTCACTAGT TACTCTTGAG ACCTTCTGTC
  TCCCGTGTCC TTTCACTGTA CACTCCCATC CTCTGCTCCC TTTGAATTAG AGCACAGAAA
  ATGGGGAGGG GCCAGAGAGC AGGGCTGAGT TTTAAAGTAT GCTTTGGAGA TGTTCTTTAG
  ATGGGCTGTT GTTAACAGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45450714	mCV23975486	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss135748513	ENSMUSSNP259468	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs30647488					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122524742 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	158 bp distal
Pde5a	phosphodiesterase 5A, cGMP-specific	within coordinates
Rr584394	regulatory region 584394	1513 bp distal
Rr584395	regulatory region 584395	within coordinates
Rr584396	regulatory region 584396	610 bp distal
Tssr31511	transcription start site region 31511	1959 bp downstream
Tssr31512	transcription start site region 31512	1911 bp downstream
Tssr31513	transcription start site region 31513	1860 bp downstream
Tssr31514	transcription start site region 31514	1358 bp downstream
Tssr31515	transcription start site region 31515	1224 bp downstream
Tssr31516	transcription start site region 31516	1199 bp downstream
Tssr31517	transcription start site region 31517	1164 bp downstream
Tssr31518	transcription start site region 31518	1036 bp downstream
Tssr31519	transcription start site region 31519	974 bp downstream
Tssr31520	transcription start site region 31520	940 bp downstream
Tssr31521	transcription start site region 31521	854 bp downstream
Tssr31522	transcription start site region 31522	832 bp downstream