rs30647535 SNP Detail

Summary

• ID
  rs30647535
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152600498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGTTGAC GGCCACTCTC
  TTCTCTGAAG TGAAGAATGT ATCCTTTGTT GTAACTGTAA CAAAAATTAA TGACATACAA
  GGCCCCCCAA ATTTAAAAAG GACAAACTCT ATTTATAAAT AAAAGCAGTA AGTTAATAAA
  ATTGAGGAAG CAAAGTCAAC ACCACTCAAG TGGTTGGAAT CTTTCCTTCC TAACAGAAAG
  S
  TTACAGATGC AAAAATAAAA AAATCCAGCT ATCCAATAAA ATCAGCAAAA TGTATAAAAA
  TAGCACATGT TAAAGTCAAC TAAATATTCC TGGACAACTT ACCATAGAAA CTCATACAAG
  CATTTATATT AATATATATT TGATTTTACT TTAATGAATT ATAAAGCAGA ACAAAATGAA
  ATGCATTAAG TGGTTAGGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45449431	mCV22357372	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	C
ss136104534	ENSMUSSNP1248349	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		C
ss321029097	CHEV_3_152557825	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30647535					SNP	G	G	C	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152600498 () rs orientation: forward

Symbol	Name	Function Class
Gm46830	predicted gene, 46830	912 bp upstream
Rr82809	regulatory region 82809	83 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	within coordinates