rs30647649 SNP Detail

Summary

• ID
  rs30647649
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58660974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGG TGTTTATGAT ACATTCCAAC
  Y
  GGTAATGCTT TCCAGGTAGC AACTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44949595	mCV25001653	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss146566689	ENSMUSSNP5692684	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss325872636	CHEV_19_58747032	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30647649					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58660974 () rs orientation: forward

Symbol	Name	Function Class
Pnlip	pancreatic lipase	within coordinates
Tssr5571	transcription start site region 5571	579 bp upstream
Tssr157263	transcription start site region 157263	821 bp downstream
Tssr157264	transcription start site region 157264	763 bp downstream
Tssr157265	transcription start site region 157265	711 bp downstream
Tssr157266	transcription start site region 157266	530 bp upstream
Tssr157267	transcription start site region 157267	544 bp upstream
Tssr157268	transcription start site region 157268	602 bp upstream
Tssr157269	transcription start site region 157269	1199 bp upstream
Tssr157270	transcription start site region 157270	1262 bp upstream
Tssr159956	transcription start site region 159956	1944 bp upstream
Tssr159957	transcription start site region 159957	803 bp upstream
Tssr159958	transcription start site region 159958	676 bp upstream
Tssr159959	transcription start site region 159959	573 bp downstream
Tssr159960	transcription start site region 159960	627 bp downstream