rs30647771 SNP Detail

Summary

• ID
  rs30647771
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22037646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCA GCGGGGGGAG GGCTCCGAGA
  Y
  GCGCGGGGCG GGCTCGGGGC TGCGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J
ss39208127	mCV22932359	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J
rs30647771					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22037646 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6225	CpG island 6225	892 bp distal
Cpgi6226	CpG island 6226	within coordinates
Cpgi6227	CpG island 6227	1341 bp proximal
Rr488632	regulatory region 488632	1386 bp distal
Rr488633	regulatory region 488633	1303 bp distal
Rr488634	regulatory region 488634	1936 bp proximal
Tssr127698	transcription start site region 127698	1921 bp upstream
Tssr127699	transcription start site region 127699	69 bp upstream
Tssr127700	transcription start site region 127700	5 bp upstream
Tssr127701	transcription start site region 127701	283 bp downstream
Tssr127702	transcription start site region 127702	307 bp downstream
Tssr127703	transcription start site region 127703	416 bp downstream
Tssr127704	transcription start site region 127704	836 bp downstream
Tssr127705	transcription start site region 127705	1897 bp downstream
Zfp503	zinc finger protein 503	within coordinates