rs30649458 SNP Detail

Summary

• ID
  rs30649458
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:117769033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTAAGAGA ACAAGAAGAA
  AAGGAAAGTG GCTTCATAAA ACAGAAAGTG AATACTCAAA ACAAATGACA TCTAAGCCTT
  CAGAGAACTA CGATGGCCTT TTGGAGAACT CTGTTTCAAA AGAGCCATCT CTTCTGCACA
  CGTGTAGCAA AAAGGCACTG GGGGAAGATG GCAATATCTG CGGAAATAAG ACAACAAAAC
  W
  CCTGTTCTCT TCCTTTGTTT TGTGGTTGAT GAAGCTGTAA TTCACTTAGA TTTCAAAATT
  AGACTCCTGC CCACTAGTCT TTCAGCCCCC ACCCCTCCCC TAGTTGCTAT ATATCCACTA
  CCATCTACTT GTTACAGTCA TTTCGTTATT TTCTTTTGTT CTCTGCTATC ACAGGAGAGA
  AATTATCTTA AAATTATTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss45450735	mCV23489834	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
ss135695326	ENSMUSSNP4495885	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs30649458					SNP	A	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117769033 () rs orientation: forward

Symbol	Name	Function Class
4921521D15Rik	RIKEN cDNA 4921521D15 gene	1847 bp downstream
Gm32344	predicted gene, 32344	within coordinates
Rr583879	regulatory region 583879	343 bp proximal
Rr583880	regulatory region 583880	423 bp proximal