rs30649856 SNP Detail

Summary

• ID
  rs30649856
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129874845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTA TCGGCAGCCG TGGTAACCAG
  M
  GTCTCCCAGC TTCTCCCAGC TTCTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45542025	mCV22732262	ABI	CRAMUS_MOUSE	f	SNP	C	A					A	C
ss46970013	NES10879466	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	A	A	C		C	C	C		C	C	C		C
ss135891552	ENSMUSSNP6201181	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						C
ss320964161	CHEV_3_129784114	CHEVERUD	SCREENING_POP	f	SNP											A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30649856					SNP	C	A	C	A	A	C	A	C	C	C	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46970013	NES10879466	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129874845 () rs orientation: forward

Symbol	Name	Function Class
Gm42663	predicted gene 42663	67 bp downstream
Rr585128	regulatory region 585128	1084 bp distal
Rr585129	regulatory region 585129	1184 bp distal