rs30652179 SNP Detail

Summary

• ID
  rs30652179
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107355316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATAGCCAA GCGTTGTCAT
  GGTGACCACA GCCCACCAGA AACCGATGGG GATGTTCTTG AAGTCGGTGT GGTCGTTGCC
  CCGTGGGTCA GATGGCCTGG CCCCAATTCG CTCGGCATAA TAGATCATGG TGGCGAAGAT
  GAGCACACCC AGGGCCAAGA AGATGATAAG CAACAGGAAC TCATTAGTGC TGGCCCGGAG
  W
  GTGTGGCCTA GCACACGCAG CCCCACAAAG TGGCGTGTGA GCTTGAAGAT CCGCAGGATG
  CGTACAAAGC GTACCACACG CAGGAAACCC AGCACATCGC GAGCTGCCTT GGAAGACAAA
  CCACTCAATC CCACCTCCAG GTAAAAGGGT AAGATGGCCA CAAAGTCGAT GATGTTGAGC
  AAGTTCTTGA CAAAGTCCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45450280	mCV24801920	ABI	CRAMUS_MOUSE	f	SNP		T	A						A
ss46855722	NES10710890	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	A	A	T		A	A	T	A	T	T
ss135584125	ENSMUSSNP1271945	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30652179					SNP	T	T	A	A	A	A	A	T	A	A	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855722	NES10710890	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107355316 () rs orientation: forward

Symbol	Name	Function Class
Kcnc4	potassium voltage gated channel, Shaw-related subfamily, member 4	Coding-Synonymous
Rr582975	regulatory region 582975	804 bp distal