rs30652342 SNP Detail

Summary

• ID
  rs30652342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:106889421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCATAC
  ACACACACCA AACATGAGAC AGACAGAGAC ACAGAGACAC AGAGAGAGAA TTTAAACCAG
  Y
  TAAGCAACAT GTTAAACCTT AAAACCAACT CTCTGCTTGG ATCACAGGTC CTGCTTCAGC
  TACTACCCTG TTTCTTTTCT CCCCTTTAAG TCAAACCTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45451158	mCV22905126	ABI	CRAMUS_MOUSE	f	SNP	C	T					C		T
ss46849942	NES10705348	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	C	T		C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30652342					SNP	C	T	T	C	C	T	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46849942	NES10705348	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106889421 () rs orientation: forward

Symbol	Name	Function Class
Gm27008	predicted gene, 27008	505 bp upstream
Rr582880	regulatory region 582880	696 bp distal
Rr582881	regulatory region 582881	385 bp distal