rs30653526 SNP Detail

Summary

• ID
  rs30653526
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:169314053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTC CACTGACTAC TTCTACTAAG
  Y
  TCAGAGCATC TTTCTTCCCA GGGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44949464	mCV24848843	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		C
ss49746190	NES13046253	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	C	T	T		C	C	T	C		T	T	C		C
ss146099006	ENSMUSSNP2027406	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
ss320102015	CHEV_1_171416615	CHEVERUD	SCREENING_POP	f	SNP													C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30653526					SNP	T	T	T	C	C	T	T	C	C	C	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49746190	NES13046253	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:169314053 () rs orientation: forward

Symbol	Name	Function Class
Gm53643	predicted gene, 53643	636 bp upstream
Gm71126	predicted gene, 71126	814 bp downstream
Rr422941	regulatory region 422941	718 bp distal
Rr422942	regulatory region 422942	515 bp distal