rs30654153 SNP Detail

Summary

• ID
  rs30654153
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:116693034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTG CAGAAGATAG GACTATTGTC
  R
  AACAAAGCAA GGTGAATAGC TGAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45949994	mCV24118572	ABI	CRAMUS_MOUSE	f	SNP	G	G	A				A		G
ss51859017	NES14881831	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G		G	G	A	G		G	A	G		G
ss133578887	ENSMUSSNP6422030	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
ss321918808	CHEV_6_116666091	CHEVERUD	SCREENING_POP	f	SNP												A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30654153					SNP	G	G	A	G	A	G	A	G	G	A	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51859017	NES14881831	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116693034 () rs orientation: forward

Symbol	Name	Function Class
Rr142500	regulatory region 142500	1802 bp proximal
Rr145611	regulatory region 145611	within coordinates
Rr147145	regulatory region 147145	835 bp distal
Tmem72	transmembrane protein 72	within coordinates
Tssr62610	transcription start site region 62610	553 bp downstream
Tssr62611	transcription start site region 62611	646 bp downstream
Tssr62612	transcription start site region 62612	664 bp downstream
Tssr62613	transcription start site region 62613	815 bp downstream