rs30654425 SNP Detail

Summary

• ID
  rs30654425
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32462961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAG AAGCAGAAAT GACTCAAAGA
  M
  CTAGCAAGGC CCACCCACCA CAGGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45451334	mCV24284520	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	A
ss134749391	ENSMUSSNP2913727	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
ss320698100	CHEV_3_32307734	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30654425					SNP	C	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32462961 () rs orientation: forward

Symbol	Name	Function Class
Pik3ca	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	within coordinates
Rr574958	regulatory region 574958	within coordinates
Tssr32930	transcription start site region 32930	165 bp downstream