rs30654532 SNP Detail

Summary

• ID
  rs30654532
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132519151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGCACCCT GTCCCTAGGG CATGTCTGAG GCTGTTCAAA
  CAGGAAGGAA GGAACAGGTG GGCTGTGTGG ACATGCCTGC CCCTGCGCTT AGCTAGGATA
  S
  ATCTGCATTG ATTTTGCTGC TGTAAAACTG CTAAGTCAGG TGGATCTCAG TCCAGAAGTG
  CTGGCTGAGA AACACAAGGT CCTACTGCAG CTGCTGCAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45452203	mCV25032385	ABI	CRAMUS_MOUSE	f	SNP		C	G					C
ss46977656	NES10886890	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	G	G	C	G	C	G	G	C
ss135914826	ENSMUSSNP67807	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30654532					SNP	C	C	G	G	G	G	G	C	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46977656	NES10886890	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132519151 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr375756	regulatory region 375756			within coordinates
Rr585456	regulatory region 585456			1270 bp distal
Rr585457	regulatory region 585457			641 bp distal
Rr585458	regulatory region 585458			821 bp proximal
Rr585459	regulatory region 585459			1317 bp proximal
Tbck	TBC1 domain containing kinase			Intron
				Noncoding-Transcript-Variant
Tssr31762	transcription start site region 31762			1598 bp upstream