rs30655901 SNP Detail

Summary

• ID
  rs30655901
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:23118347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGCA GCCGCTGGTT GCCGGGCTCC
  S
  AGCAGTTTCC CTTTTAAATG TCAGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44950306	mCV22350221	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	C
ss146216166	ENSMUSSNP7118609	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		C
ss325768034	CHEV_19_23215473	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30655901					SNP	G	G	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23118347 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10683	CpG island 10683	within coordinates
Gm56648	predicted gene, 56648	within coordinates
Gm59174	predicted gene, 59174	356 bp downstream
Klf9	Kruppel-like transcription factor 9	243 bp upstream
Rr405898	regulatory region 405898	82 bp downstream
Rr545290	regulatory region 545290	830 bp distal
Rr545291	regulatory region 545291	within coordinates
Rr545292	regulatory region 545292	121 bp proximal
Tssr155578	transcription start site region 155578	872 bp downstream
Tssr155579	transcription start site region 155579	142 bp downstream
Tssr155580	transcription start site region 155580	32 bp downstream
Tssr155581	transcription start site region 155581	16 bp downstream
Tssr155582	transcription start site region 155582	within coordinates
Tssr155583	transcription start site region 155583	36 bp upstream
Tssr155584	transcription start site region 155584	81 bp upstream
Tssr155585	transcription start site region 155585	143 bp upstream
Tssr155586	transcription start site region 155586	200 bp upstream
Tssr155587	transcription start site region 155587	659 bp upstream
Tssr155588	transcription start site region 155588	693 bp upstream
Tssr158621	transcription start site region 158621	330 bp upstream
Tssr158622	transcription start site region 158622	10 bp upstream
Tssr158623	transcription start site region 158623	1073 bp downstream
Tssr158624	transcription start site region 158624	1387 bp downstream