rs30656686 SNP Detail

Summary

• ID
  rs30656686
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:125395038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTCCTGCCTC CTGCCTCCTG CCTCCTGCCT CCTGCCTCCT GCCTCCTGCC TCCTGCCTCC
  TGCCTCCTGC CTCCTGCCTC CTGCCTCTGC CTCCTGAGCG CTTAGGTGTG TTACCTACCC
  CATGCCTGGC CCTTTCTAAA TGTTTCTGCT GTAGCTGTGT GTTTGCTTTC TCTGTGTCAC
  CCGTTCCCAG CAACAGTGAC TTCTATGATT TCAGAGTGTG ATGAACCACA CACTGTGAAT
  ATAGAAAGCA CTGGAAGAAG AAGAAGAAGA AGAAGAAGAA GAAGAAGAAG AAGAAGAAGA
  M
  GAGACGACGA CTTACAGTTA GTTATATGTG TGTCCCTGGG TGTGGCTGCC GATGGAGGCC
  AGAAGAAGCA TCGGATCCCT TGGAGCAGGA AACCACGGGT AGTCGTGAGG GTGCTGCTTG
  GTGTTGGTGC AGGGCTTGCC GAGTATACCA CGGGCACCAA GGGTCCTGGC CGTGCTAGGA
  GCTGAGCTGG CTGAGTAAGA ACATTGAGTG AGCCGGGCGT TGGTGGCACA TGCCTTTAAT
  CCCAGCACTT GGGAGGCAGA GGCAGGCGGA TTTCTGAGTT CGAGGCCAGC CTGGTCTACC
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45951298	mCV24919576	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30656686					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:125395038 () rs orientation: forward

Symbol	Name	Function Class
D6Jpk2	DNA segment, Chr 6, Japan, Kominami 2	within coordinates
Gm66368	predicted gene, 66368	within coordinates
Gm66372	predicted gene, 66372	1554 bp downstream
Rr638702	regulatory region 638702	166 bp distal
Rr638703	regulatory region 638703	569 bp proximal
Rr638704	regulatory region 638704	834 bp proximal
Rr638705	regulatory region 638705	1284 bp proximal