rs30656992 SNP Detail

Summary

• ID
  rs30656992
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:19957521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAATCTAG ACTTCTGTCG
  TTCCAGAAAA CATATCTGAT AAGGCATAAA TGAATTCCGC CCTCTCCATA AAGCTGGGAT
  GTTTCAATTC CCTTTGTACT TTAAATGCCT ATAATGTATT GATATCATCT GTGGGGTATT
  AAAAATGAAA ACTTGGGTTC TAGCAAGAAA TAGTTGATGA TTATTATCTG CAGTTTCAAA
  S
  TTATTTTCTT TTAATTATTG TCTATGCCAA TTAAAACTCA CATGCCTTTC TCCTACCCCA
  ATTCTCTGCC TGCCTGTGAC TCCTACAGAC AAATCAAGCA GTGGAAGGTT CTACCCTATC
  CCTTTTACAC CCCATTCACA AGGCCACAGA TTTGTCTGCA TCCCTGGACA ATCAGGTGAT
  ATCACCATTC CCTTGCTCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45951893	mCV24720424	ABI	CRAMUS_MOUSE	f	SNP	G	G	C					C	C
ss60868783	NES15987363	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C	C		C	C	C	G	C	C	G	G
ss133058547	ENSMUSSNP7143914	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30656992					SNP	G	G	C	C	C	C	C	C	C	C	C	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60868783	NES15987363	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:19957521 () rs orientation: forward

Symbol	Name	Function Class
Rr379021	regulatory region 379021	743 bp upstream