rs30658979 SNP Detail

Summary

• ID
  rs30658979
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:60701959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCGG AAAGTGACCA CAGCAACACC
  W
  CCAGCCGGAA CCCCGCAGCG GGCTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss46430376	mCV23023745	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs30658979					SNP	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60701959 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2996	CpG island 2996	within coordinates
Gm74448	predicted gene, 74448	60 bp upstream
Rr402613	regulatory region 402613	32 bp upstream
Shmt1	serine hydroxymethyltransferase 1 (soluble)	within coordinates
Tssr108309	transcription start site region 108309	106 bp upstream
Tssr108310	transcription start site region 108310	within coordinates
Tssr108311	transcription start site region 108311	95 bp downstream
Tssr108312	transcription start site region 108312	122 bp downstream