rs30659400 SNP Detail

Summary

• ID
  rs30659400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47719652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG GCTGGGGATG CCCTCTACTG
  Y
  TTATGCAGAG ACACCCACAT AGACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44950636	mCV25365548	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss325827252	CHEV_19_47805703	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30659400					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47719652 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11035	CpG island 11035	within coordinates
Gm58934	predicted gene, 58934	within coordinates
Rr370527	regulatory region 370527	within coordinates
Rr406020	regulatory region 406020	725 bp upstream
Rr549123	regulatory region 549123	within coordinates
Rr549124	regulatory region 549124	within coordinates
Rr549125	regulatory region 549125	125 bp proximal
Rr549126	regulatory region 549126	253 bp proximal
Rr549127	regulatory region 549127	336 bp proximal
Rr549128	regulatory region 549128	480 bp proximal
Sfr1	SWI5 dependent recombination repair 1	507 bp upstream
Tssr156884	transcription start site region 156884	530 bp upstream
Tssr156885	transcription start site region 156885	561 bp upstream
Tssr156886	transcription start site region 156886	1732 bp upstream