rs30659842 SNP Detail

Summary

• ID
  rs30659842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165589734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCTCTTCT TCCTCTTTCT CTACTCCTCC TCCTGCTCTT
  CCTCTTCCTC CTCATCTTCT TTCTCCTCTT CTTCTTCCTC CTCCTCCTCC TCTTTCATTC
  Y
  TCCTCTTTCC CCGTCTCACC TACCTCTAAT CCTTCCAATG ACTGGCTGCA GCCAATTTTA
  TTTAACCAAT AGATGTAAAT CAAGGAACAA GGTCTGTAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss44951419	mCV24495046	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss146006523	ENSMUSSNP4598061	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs30659842					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165589734 () rs orientation: forward

Symbol	Name	Function Class
Cpgi955	CpG island 955	1392 bp proximal
Creg1	cellular repressor of E1A-stimulated genes 1	1593 bp upstream
Gm70530	predicted gene, 70530	within coordinates
Rr13809	regulatory region 13809	134 bp distal
Rr28876	regulatory region 28876	866 bp proximal
Rr396502	regulatory region 396502	1373 bp upstream
Tssr9817	transcription start site region 9817	1587 bp upstream