rs30659925 SNP Detail

Summary

• ID
  rs30659925
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74319321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCGGGTCT CCAGGGAGGA AAAGGACAAG GAGTAAGCAG
  GTCAGCTGAA GGGGTCAGAA AGCAGTCCAG TGGTCTCCCC TCCTCTTCCC TCTGCACCCC
  R
  CAACTCTGCT GGGGGCAGGG GCGTCCCTTT ATCCCCCTTA ACACCAGACA CCATGCCAGA
  GGCTACAGCT GTTAACGGTC AGGTCTCTGG ACACAAAAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44951511	mCV23129152	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
ss144685961	ENSMUSSNP2307884	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30659925					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74319321 () rs orientation: forward

Symbol	Name	Function Class
Aamp	angio-associated migratory protein	within coordinates
Gm28364	predicted gene 28364	999 bp upstream
Gpbar1	G protein-coupled bile acid receptor 1	538 bp downstream
Rr17376	regulatory region 17376	521 bp distal
Tssr7371	transcription start site region 7371	994 bp upstream
Tssr7372	transcription start site region 7372	1020 bp upstream
Tssr7373	transcription start site region 7373	1052 bp upstream
Tssr7374	transcription start site region 7374	1063 bp upstream
Tssr12291	transcription start site region 12291	950 bp downstream