rs30660414 SNP Detail

Summary

• ID
  rs30660414
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:54970020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCT ACAGCTCCTC CCGCCCACTG
  R
  CGTCGCTTTT CTATTGGATG CATCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45949870	mCV24061941	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss133206766	ENSMUSSNP4397898	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss321805145	CHEV_6_54943029	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30660414					SNP	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:54970020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17470	CpG island 17470	within coordinates
Ggct	gamma-glutamyl cyclotransferase	73 bp upstream
Rr366742	regulatory region 366742	47 bp upstream
Rr630884	regulatory region 630884	378 bp distal
Rr630885	regulatory region 630885	227 bp distal
Rr630886	regulatory region 630886	within coordinates
Tssr61105	transcription start site region 61105	157 bp upstream
Tssr61106	transcription start site region 61106	128 bp upstream
Tssr61107	transcription start site region 61107	114 bp upstream
Tssr61108	transcription start site region 61108	99 bp upstream
Tssr61109	transcription start site region 61109	78 bp upstream