rs30662046 SNP Detail

Summary

• ID
  rs30662046
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:159221953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGTGGTC ATACTACAAG
  ACAAATCAGG TAGGTATTTA GAAAAGAATC TGGAATCTTT TCAAACCTAG TAACCAAAGG
  TGCATTTATA GGTTAGTATA GAAAGTAGAA CATTTTCCTA GGACACATTC ATTTAGCAAT
  AATGATGGAA TTTTTGGAAG TAAATATTAT TTATGCTATC ACAAAAAAGT ATTTAATTGC
  K
  TAAATGAATT AATATGACTT TAAAAATATG GCAGTGATAA ACATCCAAAA TGTAGACAAT
  AAAAACTATA TTAACAACAC GTGCGTTAAG TACCTACAAT GTGCCAAACA TTTTGCTAAA
  GATTTAGTGA TGAATAAGCT GGATATGGTG CCAACTTAAA ATTTGAAGCA AGCCTCAATG
  GAAGAGTACC CTGATATTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss45453856	mCV23489747	ABI	CRAMUS_MOUSE	f	SNP		G	T					T		T
ss51676412	NES14641271	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	G	T		T	T	T	G	T	T
ss136140359	ENSMUSSNP311317	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs30662046					SNP	G	G	T	T	T	G	T	T	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676412	NES14641271	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:159221953 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Depdc1a	DEP domain containing 1a			Intron
				Noncoding-Transcript-Variant
Rr588123	regulatory region 588123			1378 bp proximal
Rr588124	regulatory region 588124			1576 bp proximal