rs30662372 SNP Detail

Summary

• ID
  rs30662372
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52223814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTATG CTGCACCTTG GGGTGGGGGT
  S
  GGGGGGGGCA CCAGGCTGCT TGCAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45950682	mCV22669147	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss133191164	ENSMUSSNP4419999	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30662372					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52223814 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17436	CpG island 17436	62 bp distal
Gm56036	predicted gene, 56036	730 bp downstream
Gm56037	predicted gene, 56037	249 bp downstream
Gm56038	predicted gene, 56038	26 bp downstream
Gm56039	predicted gene, 56039	587 bp upstream
Gm56040	predicted gene, 56040	1498 bp upstream
Hoxa11	homeobox A11	1030 bp upstream
Hoxa11os	homeobox A11, opposite strand	within coordinates
Rr146302	regulatory region 146302	within coordinates
Tssr1847	transcription start site region 1847	903 bp downstream
Tssr56517	transcription start site region 56517	1820 bp downstream
Tssr56518	transcription start site region 56518	1795 bp downstream
Tssr56519	transcription start site region 56519	847 bp downstream
Tssr56520	transcription start site region 56520	822 bp downstream
Tssr61029	transcription start site region 61029	1071 bp upstream
Tssr61030	transcription start site region 61030	1041 bp upstream
Tssr61031	transcription start site region 61031	1008 bp upstream