rs30662472 SNP Detail

Summary

• ID
  rs30662472
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:119981900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGT GAGCAACTGC TGTGATGCCT
  M
  AGGGCATAAA GACCTCCTCC TTTCG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44951949	mCV22772764	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A	C
ss145310722	ENSMUSSNP5285021	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss319931527	CHEV_1_121950747	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30662472					SNP	C	C	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:119981900 () rs orientation: forward

Symbol	Name	Function Class
Gm41936	predicted gene, 41936	1433 bp upstream
Rr30107	regulatory region 30107	702 bp proximal
Rr371936	regulatory region 371936	within coordinates
Sctr	secretin receptor	within coordinates
Tssr8396	transcription start site region 8396	1063 bp upstream
Tssr8397	transcription start site region 8397	1079 bp upstream