rs30663190 SNP Detail

Summary

• ID
  rs30663190
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191820611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACT GTCCTAATTA TGCTTGTAAC
  K
  GTTACCCTTC TCCTTTCAGA GAGGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss44952285	mCV25166232	ABI	CRAMUS_MOUSE	f	SNP	T	G	T
ss146513837	ENSMUSSNP5409518	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T		T
ss320197027	CHEV_1_193960193	CHEVERUD	SCREENING_POP	f	SNP				T		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs30663190					SNP	T	G	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191820611 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1232	CpG island 1232	153 bp proximal
Gm10516	predicted gene 10516	587 bp upstream
Gm37055	predicted gene, 37055	378 bp upstream
Rcor3	REST corepressor 3	within coordinates
Tssr15823	transcription start site region 15823	1265 bp downstream
Tssr15824	transcription start site region 15824	1580 bp downstream
Tssr15825	transcription start site region 15825	1641 bp downstream
Tssr15826	transcription start site region 15826	1684 bp downstream