rs30663838 SNP Detail

Summary

• ID
  rs30663838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10414548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGACCAGAT TTCCTCCATG AGATAGAGCA TACTTAGGTG
  GGGCTGAGGC TACCCACACC TACAATGGCC TAAGATTCCC CCATAATATG AGAGGGAATG
  R
  GGGTGCAGGT AGTTTTGGCT GGCTCTGCCT ACTTGTGCCA TGAATTCTTT TACCCTCCTG
  GGAGTCCCAC AGTCTTAAGT TCCATGGTCC CCAACCCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44950778	mCV22700087	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	G
ss146042384	ENSMUSSNP706440	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
ss325720397	CHEV_19_10511674	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30663838					SNP	A	A	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10414548 () rs orientation: forward

Symbol	Name	Function Class
Rr544112	regulatory region 544112	709 bp distal
Rr544113	regulatory region 544113	1049 bp distal
Rr544114	regulatory region 544114	420 bp proximal
Rr544115	regulatory region 544115	471 bp proximal
Syt7	synaptotagmin VII	within coordinates
Tssr155051	transcription start site region 155051	1978 bp downstream