rs30665133 SNP Detail

Summary

• ID
  rs30665133
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135978956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACCTCCCC GGCGCCCTGA CTGAGAAGCG GCTCAGCAAG
  GTGGAGACAC TGCGCGCCGC CATCCGCTAC ATCAAGTACC TGCAGGAGCT GTTGAGCGCC
  R
  CCCCCGACGG CGCGCCACCT CCCGCCACCT CCCCGCCGCC CGCCCACACG GGCCACAGCA
  ACGTGCCGCA GCCCTCTTCC TTGGTGGCCG AGTCCAGTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	NOD/ShiLtJ
ss44951847	mCV23000179	ABI	CRAMUS_MOUSE	f	SNP	G	A					A	G
ss49681906	NES12982436	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A		G	A	A
ss145551581	ENSMUSSNP6224632	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A						G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	NOD/ShiLtJ
rs30665133					SNP	G	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681906	NES12982436	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135978956 () rs orientation: forward

Symbol	Name	Function Class
Ascl5	achaete-scute family bHLH transcription factor 5	within coordinates
Cacna1s	calcium channel, voltage-dependent, L type, alpha 1S subunit	1593 bp upstream
Cpgi803	CpG island 803	within coordinates
Rr419345	regulatory region 419345	404 bp distal
Rr419346	regulatory region 419346	9 bp proximal
Tssr9037	transcription start site region 9037	1536 bp upstream
Tssr9038	transcription start site region 9038	1553 bp upstream
Tssr9039	transcription start site region 9039	1586 bp upstream
Tssr9040	transcription start site region 9040	1728 bp upstream