rs30665304 SNP Detail

Summary

• ID
  rs30665304
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:11797210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTAACTACC GGGCAGAGTT GTAGGATAAA GACGTTTGTT TGATTTGGAA AACTTAAGCC
  CACCTCTCTC CTCCTTGCTG TCAAGAGCCC TGGGATTTGA AGAATTTTTA GAAAAGTGTG
  GTTCTTCTCA CTGCCCTTCC TCTTCAACGG TGCCCCTATT CCCTTCCCCT CCGTATTTGA
  TTTGGGGATA ACAAATGGCG TATCGACCAG AGTAGTGGTC AACAATTGGC GCTAGTGAAG
  ACTTGGTCTC AAGTTCGAGA AGTATCCTCG ACTTTGTGTT CAATCTTAAA GGCCATAGAT
  R
  CTTTCTAATT ATAACCGGAC TTTACCCTCT GCGATGTGCA CGCTCCTACT GACTTCCTCC
  GCTGCCATAA AGGTAGTCAA GTAAGGCAGG GCTTGAGCTG TTAGAGCCAA CTATGCGGTA
  ATCAACTCTA ATCCTCTATC TGACCTCCGG CTCCTGTCCT GACGCTGGCC CAGCGAGGAC
  TGCGAAAGTT TCCACGCCCC CTGGTGGTCG TAACCCTACA GCTAGGGCTT GAACACCCCC
  ACCCCAGCCC AGCAAACACT TGGAAAACCT TCCGCCACCG AGCTCATTCT CTAGCATCAG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J
ss44951974	mCV23299258	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J
rs30665304					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11797210 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi10634	CpG island 10634			450 bp distal
Cpgi10635	CpG island 10635			within coordinates
Gm41810	predicted gene, 41810			within coordinates
Gm59062	predicted gene, 59062			within coordinates
Rr544382	regulatory region 544382			1612 bp distal
Rr544383	regulatory region 544383			1136 bp distal
Rr544384	regulatory region 544384			414 bp distal
Rr544385	regulatory region 544385			191 bp proximal
Rr544386	regulatory region 544386			587 bp proximal
Rr544387	regulatory region 544387			609 bp proximal
Stx3	syntaxin 3			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr155283	transcription start site region 155283			1742 bp downstream
Tssr155284	transcription start site region 155284			1731 bp downstream
Tssr155285	transcription start site region 155285			1270 bp downstream
Tssr155286	transcription start site region 155286			804 bp downstream
Tssr155287	transcription start site region 155287			1635 bp upstream
Tssr155288	transcription start site region 155288			1976 bp upstream
Tssr158398	transcription start site region 158398			1404 bp upstream
Tssr158399	transcription start site region 158399			963 bp upstream
Tssr158400	transcription start site region 158400			881 bp upstream