rs30665366 SNP Detail

Summary

• ID
  rs30665366
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136494503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTCAGCTGG GTGTTTCCCC TTTCAAGGCC TCTTGTTAGA
  TTAAGTCAAG TCTATTCTAG ATATTCTCTC TTTCAACTCA AAATCAATCT AGAATCTTAA
  W
  TACATCTATT AAAAACACTT ACCTTTTTCC TTTTCCCTTT TTTGGAAACA GGGTTTCTCT
  ATATAGCCCT GGGTATCCTG AAACTAGATC TGTAAACCA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45952241	mCV23060339	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
ss133840252	ENSMUSSNP6802759	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss321996249	CHEV_6_136466026	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30665366					SNP	T	T	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136494503 () rs orientation: forward

Symbol	Name	Function Class
Atf7ip	activating transcription factor 7 interacting protein	1284 bp upstream
Cpgi18104	CpG island 18104	1096 bp proximal
Gm44140	predicted gene, 44140	within coordinates
Rr133547	regulatory region 133547	898 bp proximal
Rr145858	regulatory region 145858	697 bp proximal
Rr400014	regulatory region 400014	1063 bp upstream
Rr400015	regulatory region 400015	1461 bp upstream
Tssr59315	transcription start site region 59315	1281 bp upstream
Tssr59316	transcription start site region 59316	1315 bp upstream
Tssr59317	transcription start site region 59317	1361 bp upstream
Tssr63803	transcription start site region 63803	993 bp downstream
Tssr63804	transcription start site region 63804	1256 bp downstream
Tssr63805	transcription start site region 63805	1553 bp downstream