rs30665544 SNP Detail

Summary

• ID
  rs30665544
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:57798169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAGCAGATGC TGGAGAGGAT GTGGTGGAAG AGGAATACTT CTCCATTGCT GGTGGGGTTG
  CAAGCTTGTA CAACCACTCT GGAAATCAGT CTGGCGGTTC CTCACAAAAT TGGACACAGT
  ACTTCAGAGC ATCCAGCAAT ACCTCTCCTA GGCATATACC CAGAAGATGT TCCAACTGGT
  AATAAGGTCA CATACTCTAC TATGTTCATA GTAGTCTTAT TTATAATAGT CAGAAGCTGT
  AAAGAACCCA GATATCCCTC AACAGAGGAA TGGATACAGA AAATGTGGTA CATTTACACA
  W
  TGGAGTACTA CTCAGCTATT AAAAAGAATG AATTTATGAA ATTCCTAGGC AAATGGATGG
  ATCTGGAGGT AGCCCAATCA CAAAAGAACT CCCATGATAT GCACTAACTG ACAAGTGGAT
  ATTAGTTCAG AAACTTAGAA TACCCAAGAT ACAATTTGCA AAACATATGA AACTCAAGAA
  GCAGGAAGAC CAAAGTGTGG ATATTTTGTT CTTACTTAGA ATTGGGGATT AAAATACCCA
  TGTAGGGGGT TACAGAAACA ACGTTTGGAG CTGAGATGGA ATGAAAGATC ATCCAGAGAC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45952529	mCV23275477	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30665544					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57798169 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr399671	regulatory region 399671			1792 bp upstream
Rr631165	regulatory region 631165			1366 bp proximal
Vopp1	vesicular, overexpressed in cancer, prosurvival protein 1			Intron
				Noncoding-Transcript-Variant