rs30665726 SNP Detail

Summary

• ID
  rs30665726
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86586587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCC CTTGGCCTTT GGACCTGGCC
  R
  TGTGAGGCTA AGCTCTATAC GTTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45953238	mCV23942314	ABI	CRAMUS_MOUSE	f	SNP		G	G				A		G
ss51751738	NES14803834	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G		G	G	G	A		G	G	A		A
ss133357956	ENSMUSSNP6601033	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
ss321846802	CHEV_6_86559599	CHEVERUD	SCREENING_POP	f	SNP												A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30665726					SNP	G	G	G	A	G	G	A	G	G	G	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51751738	NES14803834	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86586587 () rs orientation: forward

Symbol	Name	Function Class
Gm67306	predicted gene, 67306	1903 bp upstream
Gm67317	predicted gene, 67317	248 bp upstream
Rr150658	regulatory region 150658	within coordinates
Rr368114	regulatory region 368114	1798 bp downstream
Tssr1919	transcription start site region 1919	1819 bp downstream
Tssr57493	transcription start site region 57493	1759 bp downstream
Tssr57494	transcription start site region 57494	32 bp downstream
Tssr61820	transcription start site region 61820	1967 bp upstream
Tssr61821	transcription start site region 61821	1951 bp upstream
Tssr61822	transcription start site region 61822	1927 bp upstream
Tssr61823	transcription start site region 61823	1884 bp upstream
Tssr61824	transcription start site region 61824	279 bp upstream
Tssr61825	transcription start site region 61825	243 bp upstream