rs30666360 SNP Detail

Summary

• ID
  rs30666360
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTAGAAATGT CCACTGTAGG ACATGGAATA TGACAAGAAA AGTGAAAATC ATGGAAAATG
  AGAAACATCC ACTTTACGAC TTGTAAAATG ACGAAATCAC TGAAAAACGT GAAAAATGAG
  AAATGCACAC TGTAGGACCT GGAATATGGC GAGAAAACTG AAAATCACAG AAAATGAGTA
  ATACTCACTT TAGTACGTGA AATATGGCGA GGAAAACTGA AAAAGGTGGA AAATTTAGAA
  ATGTCAACTG TAGGACCTGG AATATGGCAA GAAATCTGAA AATCATGGAA AATGAGAAAC
  D
  TCCACTTGAC GACTTGAAAA ATGACAAAAT CACTGAAAAA CGTGGAAAAT GAGAAATGCA
  CACGGTAGGA CCTGGAATAT AACAAGAAAA CTGAAAATCA TGGAAAATGA GAAATACACA
  CTTTAGGACG TGAAATATGG CGAGGAAAAC TGAAAAAGGT GGAAAATTTT GGAATGTCCG
  CTGTAGGACA TGCAATATGG CAAGAAAACT GAAAATCATG GAAAATGAGA AACATCCCCT
  TTATGACTTG AAAAATGACC AAATCACTGA AAAACATGAA AAATGAGAAA TGCACACTGT
                                                                   
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46431492	mCV25358965	ABI	CRAMUS_MOUSE	f	SNP		A			T
ss46452381	mCV22680391	ABI	CRAMUS_MOUSE	r	SNP	T		T	C	T
ss46468919	mCV22791976	ABI	CRAMUS_MOUSE	f	SNP		T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30666360					SNP	A	?	A	?	?

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050542 () rs orientation: forward

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1784 bp downstream
Tssr4285	transcription start site region 4285	1759 bp upstream
Tssr4286	transcription start site region 4286	1655 bp downstream
Tssr4287	transcription start site region 4287	1620 bp upstream
Tssr4288	transcription start site region 4288	1592 bp downstream
Tssr4289	transcription start site region 4289	1497 bp upstream
Tssr4290	transcription start site region 4290	1490 bp downstream
Tssr4291	transcription start site region 4291	1410 bp upstream
Tssr4292	transcription start site region 4292	1374 bp downstream
Tssr4293	transcription start site region 4293	1339 bp upstream
Tssr4294	transcription start site region 4294	1337 bp downstream
Tssr4295	transcription start site region 4295	1264 bp upstream
Tssr4296	transcription start site region 4296	1301 bp downstream
Tssr4297	transcription start site region 4297	1237 bp upstream
Tssr4298	transcription start site region 4298	1219 bp downstream
Tssr4299	transcription start site region 4299	1179 bp downstream
Tssr4300	transcription start site region 4300	1141 bp downstream
Tssr4301	transcription start site region 4301	1123 bp upstream
Tssr4302	transcription start site region 4302	1111 bp upstream
Tssr4303	transcription start site region 4303	1056 bp downstream
Tssr4304	transcription start site region 4304	1027 bp upstream
Tssr4305	transcription start site region 4305	958 bp downstream
Tssr4306	transcription start site region 4306	939 bp upstream
Tssr4307	transcription start site region 4307	918 bp downstream
Tssr4308	transcription start site region 4308	886 bp upstream
Tssr4309	transcription start site region 4309	842 bp upstream
Tssr4310	transcription start site region 4310	795 bp downstream
Tssr4311	transcription start site region 4311	767 bp upstream
Tssr4312	transcription start site region 4312	687 bp downstream
Tssr4313	transcription start site region 4313	628 bp upstream
Tssr4314	transcription start site region 4314	616 bp downstream
Tssr4315	transcription start site region 4315	592 bp downstream
Tssr4316	transcription start site region 4316	565 bp upstream
Tssr4317	transcription start site region 4317	489 bp downstream
Tssr4318	transcription start site region 4318	465 bp upstream
Tssr4319	transcription start site region 4319	408 bp upstream
Tssr4320	transcription start site region 4320	344 bp downstream
Tssr4321	transcription start site region 4321	316 bp upstream
Tssr4322	transcription start site region 4322	217 bp downstream
Tssr4323	transcription start site region 4323	182 bp upstream
Tssr4324	transcription start site region 4324	152 bp downstream
Tssr4325	transcription start site region 4325	101 bp downstream
Tssr4326	transcription start site region 4326	63 bp upstream
Tssr4327	transcription start site region 4327	60 bp downstream
Tssr4328	transcription start site region 4328	within coordinates
Tssr4329	transcription start site region 4329	within coordinates
Tssr4330	transcription start site region 4330	123 bp upstream
Tssr4331	transcription start site region 4331	147 bp downstream
Tssr4332	transcription start site region 4332	253 bp downstream
Tssr4333	transcription start site region 4333	265 bp upstream
Tssr4334	transcription start site region 4334	287 bp downstream
Tssr4335	transcription start site region 4335	434 bp downstream
Tssr4336	transcription start site region 4336	438 bp upstream
Tssr4337	transcription start site region 4337	511 bp downstream