rs30667690 SNP Detail

Summary

• ID
  rs30667690
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:56482400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGAAATGG AAGCTTATTT GGTGCTCCCT CCCTGTCTGA
  TTTAGAAGTG TTCCCATATC CAAGATCTAT CCTTTTGCCT AAAGGAACAG TTTCAGACAA
  W
  GGAGCATTTG TCTCCAAGGG CAAATAAGCT TTCTCTTACT GTGATAAAGT ACCTTACTCA
  ATTTAAAGGC AGGAATAGCT TCAGGGGTCA CTCCATGGTT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46972040	NES10793611	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30667690					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46972040	NES10793611	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:56482400 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13194	CpG island 13194	495 bp proximal
Rr577050	regulatory region 577050	470 bp proximal
Tssr29179	transcription start site region 29179	527 bp upstream
Tssr29180	transcription start site region 29180	681 bp upstream
Tssr29181	transcription start site region 29181	711 bp upstream