rs30668025 SNP Detail

Summary

• ID
  rs30668025
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:71523081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTTTGAGGC CAGCCTGGTC TACAAAGTGA ATTCCAGGAC
  AGCCAGGGCT ATACAGAGAA ACCCTGTCTC GAAAAAAAAA AAAAAAGTCT CACAAGGAAG
  Y
  GTGAACTTCG TACTATGTAC ATGTTAAAAA ATAGTTCTGG GTGTGTACTG GCTAGTTTTG
  TGTCAACTTG ACACAGGCTG GAGTTATCAC AGAGAAAGGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47971126	NES11901680	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30668025					SNP	T	C	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47971126	NES11901680	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71523081 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700040L08Rik	RIKEN cDNA 1700040L08 gene			1983 bp upstream
Chmp3	charged multivesicular body protein 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi17526	CpG island 17526			1478 bp distal
Rr631971	regulatory region 631971			1493 bp distal
Tssr57035	transcription start site region 57035			1730 bp downstream
Tssr57036	transcription start site region 57036			857 bp downstream