rs30668027 SNP Detail

Summary

• ID
  rs30668027
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:71523672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGCAACC CTGACTAAGA
  CAGGGTGGAA ATGAAAGAGA TCACCAGTCT GTGTCTGGGC AAGGCAAACT TCTGTTATGG
  ATCAGGAAGG TGTGCTCAGA AGAGTCAACT TACAGAGACA GCAAGTACAC CTGGTTTTTA
  TTCTTACTCA GGTGGTAACT GTGCCTTTTC CACACTGATT GGGGTCTGAC CTCACAGTCT
  K
  ATTCACTCAG CTTGCTTGAA AAGAATTGCC ACACCAGAAA TGAAGAAAGG GGGTGTGTGT
  GTCACTGCTC CATCTAATTC CTGGAGAGCA GTAGGAGGCC TTTGTATAAA CAAGGGTGTT
  GGGATGGGAG TTTGAAACAT TTGTATAAAA AGTCTTGTAA GGTGGGGAAG ACTAAAAGAT
  TTGAATTCCT TCTAAACACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47971128	NES11901654	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	T	G	T	T	G	G	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30668027					SNP	T	T	G	T	T	T	G	T	T	G	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47971128	NES11901654	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71523672 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chmp3	charged multivesicular body protein 3			Intron
				Noncoding-Transcript-Variant
Tssr57036	transcription start site region 57036			1448 bp downstream