rs30668604 SNP Detail

Summary

• ID
  rs30668604
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:56482751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGGTGAA GGAGGCCTGC
  TCACCTCATA TGTGTCCTAG AAGCAAAGGG AAGGAGGAGG AACTTGGGTC CCTGAACCCA
  CTCGAGGACA TACTCGAGGA CATACTAGGT TCCTCCCATC AGCTCCCACT GGTTAAACAC
  TTTGTCACTT CTCAACAGCA CCATGGGCTA GTAATCAAGC CTTCATTACT GGGAATTTGG
  W
  GGATGAGTCT CCAAACCACA GCCCTCTTCT ACTCTGAAGA CAGGAAGATA GCAGATGACT
  CTCTTCACCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTTTATTTCT CATATTTCAC
  GTTTTTCAGT GTTTGTCACC ATATTCCAGG TCAAACAGTG TTTGTGTCTC ATTTTCCACG
  TTTTTCAGTT TTCTATCCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46972044	NES10793613	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30668604					SNP	T	T	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46972044	NES10793613	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:56482751 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13194	CpG island 13194	144 bp proximal
Rr577050	regulatory region 577050	119 bp proximal
Tssr29179	transcription start site region 29179	176 bp upstream
Tssr29180	transcription start site region 29180	330 bp upstream
Tssr29181	transcription start site region 29181	360 bp upstream