rs30668606 SNP Detail

Summary

• ID
  rs30668606
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:56483835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG CAGTATAAAG GCCTTAGTTT
  Y
  CTTGAACATA AAACATGTTA GATAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss46972046	NES10793561	PERLEGEN	MM_PANEL2	f	SNP	C	T	C		C	C		C
ss320777353	CHEV_3_56380336	CHEVERUD	SCREENING_POP	f	SNP				C			T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs30668606					SNP	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46972046	NES10793561	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:56483835 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13194	CpG island 13194	687 bp distal
Rr577050	regulatory region 577050	647 bp distal
Tssr29179	transcription start site region 29179	877 bp downstream
Tssr29180	transcription start site region 29180	741 bp downstream
Tssr29181	transcription start site region 29181	713 bp downstream