rs30668762 SNP Detail

Summary

• ID
  rs30668762
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8774319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CGTGTCTTTA ATCCCAGCAC TCAGGAGGCA GAGGTAAGTG GATGTCTGAG TTTAAGGCTA
  GTTTGGTCTA TGGGGTAAGT TCCAGGACAG CCAGGGCTAC ACAGTGAATC CCTGCCTCAA
  AAACAAAAGT ACAAAACTGA CAGCCAGGAC TACACAGAGA AACCCTGTCT CTAAAAACAA
  AAACAAACAA ACAAACAAAA AATCAAACCA ACCAACCAAC CAACCAAACA AACAAACAAA
  AAACCTGCTG GGTAGTGGTG GCACATGCCT TTAACTTGAG AGGCAGAGGC AGGTGGATTT
  Y
  TGAGTTCGAG GCCAGCCTGG TCTACAGAGT GAGTTCCAGG AGAGCCAGGG CTACACAGAG
  AAACCCTGTT TCAAAAAAAA AAAAAAAAAA AAAAAAAAAA GAAAAGAAAA GAAAAGAAAA
  GAAAAAAGAA AACCCTAAAA CCAGAAAAGA AAAACCAAAA AACTAAGATA AAATGAATCT
  TAACAACAAC AAAAGACTTA AGGCAACTAG TAAGTGGACT AGGGACTGAA CCCTCACCTT
  AGGAAATACC CCATAACCTT TCTATGAATA ATACTCTTAC CTTGTTGACC TGAGTGACCA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss44952928	mCV22332479	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30668762					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8774319 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10575	CpG island 10575	1215 bp proximal
Polr2g	polymerase (RNA) II (DNA directed) polypeptide G	within coordinates
Rr359559	regulatory region 359559	1919 bp distal
Rr359560	regulatory region 359560	1119 bp distal
Rr363766	regulatory region 363766	281 bp proximal
Tssr158056	transcription start site region 158056	1430 bp downstream
Tssr158057	transcription start site region 158057	1449 bp downstream
Tssr158058	transcription start site region 158058	1466 bp downstream
Tssr158059	transcription start site region 158059	1510 bp downstream
Tssr158060	transcription start site region 158060	1540 bp downstream
Tssr158061	transcription start site region 158061	1616 bp downstream