rs30669077 SNP Detail

Summary

• ID
  rs30669077
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94899831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAA TCTGAGAAGT ACCTGACATA
  Y
  CCCGAGCCTT GCTCCTCGGT AGCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46430948	mCV22694196	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss132651931	ENSMUSSNP2837173	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323817417	CHEV_11_94870319	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30669077					SNP	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94899831 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3571	CpG island 3571	601 bp proximal
Gm36385	predicted gene, 36385	374 bp downstream
Gm51875	predicted gene, 51875	within coordinates
Gm72634	predicted gene, 72634	within coordinates
Rr454921	regulatory region 454921	1246 bp distal
Rr454922	regulatory region 454922	617 bp distal
Rr454923	regulatory region 454923	317 bp proximal
Rr454924	regulatory region 454924	384 bp proximal
Rr454925	regulatory region 454925	885 bp proximal
Rr454926	regulatory region 454926	1236 bp proximal
Rr454927	regulatory region 454927	1975 bp proximal
Samd14	sterile alpha motif domain containing 14	874 bp upstream
Tssr104328	transcription start site region 104328	759 bp upstream
Tssr104329	transcription start site region 104329	847 bp upstream
Tssr104330	transcription start site region 104330	893 bp upstream
Tssr104331	transcription start site region 104331	931 bp upstream
Tssr104332	transcription start site region 104332	955 bp upstream
Tssr104333	transcription start site region 104333	961 bp upstream
Tssr104334	transcription start site region 104334	1070 bp upstream
Tssr104335	transcription start site region 104335	1095 bp upstream
Tssr104336	transcription start site region 104336	1171 bp upstream
Tssr104337	transcription start site region 104337	1239 bp upstream
Tssr104338	transcription start site region 104338	1272 bp upstream
Tssr104339	transcription start site region 104339	1292 bp upstream
Tssr104340	transcription start site region 104340	1361 bp upstream
Tssr104341	transcription start site region 104341	1379 bp upstream
Tssr104342	transcription start site region 104342	1467 bp upstream
Tssr110238	transcription start site region 110238	1288 bp downstream