rs30670434 SNP Detail

Summary

• ID
  rs30670434
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:85696496 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTGCA TCCCCATCTG GGCCCCAAGA
  R
  AGCCCCTCGG TGCACAGTAG ATCTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46431985	mCV22976003	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss148467952	ENSMUSSNP297875	ENSEMBL	ENSEMBL_Sanger	r	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30670434					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:85696496 () rs orientation: reverse

Symbol	Name	Function Class
Adamts5	ADAM metallopeptidase with thrombospondin type 1 motif 5	within coordinates
Cpgi8391	CpG island 8391	within coordinates
Cpgi8392	CpG island 8392	1023 bp proximal
Gm46558	predicted gene, 46558	within coordinates
Rr319329	regulatory region 319329	96 bp distal
Rr325517	regulatory region 325517	within coordinates
Tssr141913	transcription start site region 141913	252 bp upstream
Tssr141914	transcription start site region 141914	622 bp downstream
Tssr141915	transcription start site region 141915	657 bp downstream
Tssr141916	transcription start site region 141916	686 bp downstream
Tssr141917	transcription start site region 141917	995 bp downstream
Tssr141918	transcription start site region 141918	1073 bp downstream
Tssr141919	transcription start site region 141919	1111 bp downstream
Tssr141920	transcription start site region 141920	1448 bp downstream
Tssr141921	transcription start site region 141921	1510 bp downstream
Tssr141922	transcription start site region 141922	1739 bp downstream