rs30671434 SNP Detail

Summary

• ID
  rs30671434
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47414683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACC CTCTGACATG ATTTGAGAAG
  Y
  TGCACACATA GGCAGAGTCA TTTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39209193	mCV23302228	ABI	CRAMUS_MOUSE	f	SNP		C					C		T
ss62384144	NES17233448	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	T	T	C	C	T	T	C	C
ss139400139	ENSMUSSNP6718958	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30671434					SNP	C	C	C	C	C	C	C	C	T	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62384144	NES17233448	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47414683 () rs orientation: forward

Symbol	Name	Function Class
Gch1	GTP cyclohydrolase 1	within coordinates
Gm18811	predicted gene, 18811	657 bp downstream
Rr491339	regulatory region 491339	583 bp proximal
Tssr128307	transcription start site region 128307	1562 bp upstream
Tssr128308	transcription start site region 128308	78 bp downstream
Tssr128309	transcription start site region 128309	612 bp downstream
Tssr128310	transcription start site region 128310	649 bp downstream