rs30671798 SNP Detail

Summary

• ID
  rs30671798
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3028061 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  CACGGAAAAT GAGAAATACA CACTTAAGGA CGTGAAATAT GGCGAGGAAA ACTGAAAAAG
  TTGGAAAATT TAGAAATGTC CACTGTAGGA CAAGGAATAT GGCAAGAAAA CTGAAAATCA
  TGGAAAATGA GAAACATCTA CTTGACGACT TGAAAAATGA CGAAATCACT TAAAAACGTG
  AAAAATGAGA AATGCCCACT GAAGGACCTG GAATATGGGG AGAAAACTGA AAATCACGGC
  AAATGAGAAA TACACACTTT AGGACGTGAA ATATGGCGAG GAAAACTGAA AAAGGTGGAA
  W
  ATTTAGAAAT GTCCACTGTA GGACGTGGAA TATGGCAAGA AAACTGAAAA TCTTGGAAAA
  TGAGAAACAT CCACTTGACG ACTTGAAAAA TGAGGAAATC ACTAAAAAAC ATCAAAAATG
  AGAAATGCCC ACTGAAGGAC CTGGAATATG GCGAGAAAAC TGAAAATCAC GGAAAATGAG
  AAATACACAC TTTAGGATGT GAAATATGGC GTGGAAAACT GAAAAAGGTG GAAAATTTAG
  AAATGTTCAC TGTAGGACGT GGGAATATGG CAAGAAAACT GAAAATCATG GAAAACGAGA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J
ss46431899	mCV25217256	ABI	CRAMUS_MOUSE	f	SNP		A	T
ss46450002	mCV25361638	ABI	CRAMUS_MOUSE	f	SNP	A		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J
rs30671798					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3028061 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi21324	CpG island 21324	881 bp distal
Cpgi21325	CpG island 21325	1326 bp proximal
Rr673606	regulatory region 673606	1531 bp distal
Rr673607	regulatory region 673607	1051 bp distal
Rr673608	regulatory region 673608	401 bp distal
Rr673609	regulatory region 673609	within coordinates
Rr673610	regulatory region 673610	820 bp proximal
Tssr83582	transcription start site region 83582	1566 bp downstream
Tssr83583	transcription start site region 83583	1379 bp downstream
Tssr83584	transcription start site region 83584	1292 bp downstream
Tssr83585	transcription start site region 83585	916 bp downstream
Tssr83586	transcription start site region 83586	593 bp downstream
Tssr83587	transcription start site region 83587	286 bp downstream
Tssr83588	transcription start site region 83588	1310 bp upstream
Tssr83589	transcription start site region 83589	1594 bp upstream
Tssr88019	transcription start site region 88019	1341 bp upstream
Tssr88020	transcription start site region 88020	1273 bp upstream
Tssr88021	transcription start site region 88021	649 bp upstream
Tssr88022	transcription start site region 88022	573 bp upstream
Tssr88023	transcription start site region 88023	1341 bp downstream