rs30671907 SNP Detail

Summary

• ID
  rs30671907
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71531480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGATTATA GTATCACAAC
  TTTAAAAAAG AATTAGAGAT GAGAATTCTA TTGTCAGCTG TGTTAATTTT GGTCTTAACA
  CTTCTACTTC AATTGTAAAT GAAAGTTTGA ATGCATCAAC TATGAAACAA CTGCTTTTCA
  CACTGGACAG ATGACTGTGA ATAATGACAA AAGAAACAGA AAGAGAACCC TCATAGTCTG
  Y
  CTTCTTGTTA GAGATACGTT TCTTGAAAGT GGCTCATGGG AGGGGATCCC GAAAAAACAT
  GGTCGTCTCA TTGAATTGAG GATTTGGAGG TCAGGGTAAG GGAGGCTAAC ATTTGTGTCC
  TGAGTGAGAA GAGGAACATA GCCAGGGGAA GATCTCGAGA TCTCCACAGG GTCTGAGGCT
  GCGGCTGAAC ACAGAGTGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47971170	NES11901127	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	T	C	C	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30671907					SNP	C	C	T	C	C	C	T	C	C	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47971170	NES11901127	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71531480 () rs orientation: forward

Symbol	Name	Function Class
Chmp3	charged multivesicular body protein 3	within coordinates
Rr141072	regulatory region 141072	within coordinates
Tssr61385	transcription start site region 61385	1266 bp downstream