rs30671913 SNP Detail

Summary

• ID
  rs30671913
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71531593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCAACTAT GAAACAACTG
  CTTTTCACAC TGGACAGATG ACTGTGAATA ATGACAAAAG AAACAGAAAG AGAACCCTCA
  TAGTCTGCCT TCTTGTTAGA GATACGTTTC TTGAAAGTGG CTCATGGGAG GGGATCCCGA
  AAAAACATGG TCGTCTCATT GAATTGAGGA TTTGGAGGTC AGGGTAAGGG AGGCTAACAT
  Y
  TGTGTCCTGA GTGAGAAGAG GAACATAGCC AGGGGAAGAT CTCGAGATCT CCACAGGGTC
  TGAGGCTGCG GCTGAACACA GAGTGCGGCT GACAGGATAC TTACTGGGAC AAAACAACTG
  CCAGGAAGTT TTAAGCTGAA CAGTTTCCAA AGCTAACAGA GGGTTGGAAG ATGGTTTAGT
  TTTTCAAACA CAGTAAAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47971176	NES11901133	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30671913					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47971176	NES11901133	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71531593 () rs orientation: forward

Symbol	Name	Function Class
Chmp3	charged multivesicular body protein 3	within coordinates
Rr141072	regulatory region 141072	within coordinates
Tssr61385	transcription start site region 61385	1153 bp downstream