rs30672521 SNP Detail

Summary

• ID
  rs30672521
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050577 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  GATTTCGTCA TTTTTCAAGT CGTCAAGTGG ATGTTTCTCA TTTTCCGTGA TTTTCAGTTT
  TCTTGCCATA TTCCACGTCC TACAGTGGAC ATTTCTAAAT TTTCCACCTT TTTCAGTTTT
  CCTCGCCATA TTTCACGTCC TAAATTGTGT ATTTTCATTT TCCGTGATTT TCAGTTTTAC
  TCGCCATATT CCAGGTCCTT CAGTGTGCAT TTCTCATTTT TCACGTTTTT TAGTGATTTA
  GTCATTTTTC AAGTCTTCAA GTGGATGTTT CTCAAATTCC ATATTTTTCA GTTTTCTTGC
  H
  ATATTTCAAG TCCTACAGTG AACATTTCTA AATTATTCCA CATTTTCAGT TTTCCTCGCC
  ATATTTCACG TCCTAAAGTG TGTATTTCTC ATTTTTCGTG ATTTTCAGTT TTCTCGCCAT
  ATTCCAGGTC CTTCAGTGTG CATTTCTCAT TTTTCACTTT TTTTAGTGAT TTCGTCATTT
  TTCAAGTCGT CAAGTGGATG TTTCTCATTT TCCATGATTT TCAGTTTTCT TGCCATATTC
  CACGTCCTAC AGTGGACTTT TCTAAATTTT CCAACTCTTT CAGTTTTCTT CGCCATATTT
                                                                   
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46418652	mCV22822025	ABI	CRAMUS_MOUSE	r	SNP		G	A
ss46431173	mCV22839957	ABI	CRAMUS_MOUSE	f	SNP		T	C	C
ss46433175	mCV22985250	ABI	CRAMUS_MOUSE	r	SNP	T	G			G
ss46450999	mCV23589133	ABI	CRAMUS_MOUSE	r	SNP		T	T		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30672521					SNP	A	C	?	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050577 () rs orientation: reverse

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1749 bp downstream
Tssr4285	transcription start site region 4285	1724 bp upstream
Tssr4286	transcription start site region 4286	1620 bp downstream
Tssr4287	transcription start site region 4287	1585 bp upstream
Tssr4288	transcription start site region 4288	1557 bp downstream
Tssr4289	transcription start site region 4289	1462 bp upstream
Tssr4290	transcription start site region 4290	1455 bp downstream
Tssr4291	transcription start site region 4291	1375 bp upstream
Tssr4292	transcription start site region 4292	1339 bp downstream
Tssr4293	transcription start site region 4293	1304 bp upstream
Tssr4294	transcription start site region 4294	1302 bp downstream
Tssr4295	transcription start site region 4295	1229 bp upstream
Tssr4296	transcription start site region 4296	1266 bp downstream
Tssr4297	transcription start site region 4297	1202 bp upstream
Tssr4298	transcription start site region 4298	1184 bp downstream
Tssr4299	transcription start site region 4299	1144 bp downstream
Tssr4300	transcription start site region 4300	1106 bp downstream
Tssr4301	transcription start site region 4301	1088 bp upstream
Tssr4302	transcription start site region 4302	1076 bp upstream
Tssr4303	transcription start site region 4303	1021 bp downstream
Tssr4304	transcription start site region 4304	992 bp upstream
Tssr4305	transcription start site region 4305	923 bp downstream
Tssr4306	transcription start site region 4306	904 bp upstream
Tssr4307	transcription start site region 4307	883 bp downstream
Tssr4308	transcription start site region 4308	851 bp upstream
Tssr4309	transcription start site region 4309	807 bp upstream
Tssr4310	transcription start site region 4310	760 bp downstream
Tssr4311	transcription start site region 4311	732 bp upstream
Tssr4312	transcription start site region 4312	652 bp downstream
Tssr4313	transcription start site region 4313	593 bp upstream
Tssr4314	transcription start site region 4314	581 bp downstream
Tssr4315	transcription start site region 4315	557 bp downstream
Tssr4316	transcription start site region 4316	530 bp upstream
Tssr4317	transcription start site region 4317	454 bp downstream
Tssr4318	transcription start site region 4318	430 bp upstream
Tssr4319	transcription start site region 4319	373 bp upstream
Tssr4320	transcription start site region 4320	309 bp downstream
Tssr4321	transcription start site region 4321	281 bp upstream
Tssr4322	transcription start site region 4322	182 bp downstream
Tssr4323	transcription start site region 4323	147 bp upstream
Tssr4324	transcription start site region 4324	117 bp downstream
Tssr4325	transcription start site region 4325	66 bp downstream
Tssr4326	transcription start site region 4326	28 bp upstream
Tssr4327	transcription start site region 4327	25 bp downstream
Tssr4328	transcription start site region 4328	within coordinates
Tssr4329	transcription start site region 4329	23 bp downstream
Tssr4330	transcription start site region 4330	158 bp upstream
Tssr4331	transcription start site region 4331	182 bp downstream
Tssr4332	transcription start site region 4332	288 bp downstream
Tssr4333	transcription start site region 4333	300 bp upstream
Tssr4334	transcription start site region 4334	322 bp downstream
Tssr4335	transcription start site region 4335	469 bp downstream
Tssr4336	transcription start site region 4336	473 bp upstream
Tssr4337	transcription start site region 4337	546 bp downstream