rs30673013 SNP Detail

Summary

• ID
  rs30673013
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3028094 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  TAGGACATGT AATATGGCGA GAAAACTGAA AATCACTGAA AATGAGAAAT ACACACTTTA
  GGACGCGAAA TATGGTGAGG AAAACTGAAA AAGTTGGAAA ATTTAGAAAT GTCCACTGAA
  AAACATGGAA TATGGCAAGA AAACTGAATA TCATGAAAAA TGAGAAACAT CTACTTGACG
  ACTTGAAAAA TGACGAATAC ACTGAAAAAC GAGAAAACTG AGAAATGCAC ACTGTAGGAC
  CTGATATATG GCGAGAAAAC TGAAAATCTC GGAAAATGAG AAATACACAC CTTAGGACGT
  V
  AAATATGGCA AGGAAAACTG AAAAAGGTGG AAAATTAGAA ATGTGCACTG AAGGACATGG
  AATATGGCAA GAAAACTGAA AATCATGGAA TTGAGAAACA TCCACTTGAC GACTTGAAAA
  ATGACGAAAT CACTGAAAAA CGTGAAAAAT GAGAAATGCA CACTGTACGA CCTAGAATAT
  GGCGAGAAAC CTGAATAACA CGGAAAATGA GAAATACACA ATTTAGGACG TGAAATATGG
  CGAGGAAAAC TGAAAAAGGT GGAAAATTTA GAAATGTCCA CTGTAGGACA TGGAATATGG
                                                                   
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss46433395	mCV23001302	ABI	CRAMUS_MOUSE	f	SNP		G	C	C
ss46440726	mCV22786698	ABI	CRAMUS_MOUSE	r	SNP		C	G
ss46464207	mCV22824357	ABI	CRAMUS_MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs30673013					SNP	G	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3028094 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi21324	CpG island 21324	914 bp distal
Cpgi21325	CpG island 21325	1293 bp proximal
Rr673606	regulatory region 673606	1564 bp distal
Rr673607	regulatory region 673607	1084 bp distal
Rr673608	regulatory region 673608	434 bp distal
Rr673609	regulatory region 673609	within coordinates
Rr673610	regulatory region 673610	787 bp proximal
Tssr83582	transcription start site region 83582	1599 bp downstream
Tssr83583	transcription start site region 83583	1412 bp downstream
Tssr83584	transcription start site region 83584	1325 bp downstream
Tssr83585	transcription start site region 83585	949 bp downstream
Tssr83586	transcription start site region 83586	626 bp downstream
Tssr83587	transcription start site region 83587	319 bp downstream
Tssr83588	transcription start site region 83588	1277 bp upstream
Tssr83589	transcription start site region 83589	1561 bp upstream
Tssr88019	transcription start site region 88019	1374 bp upstream
Tssr88020	transcription start site region 88020	1306 bp upstream
Tssr88021	transcription start site region 88021	682 bp upstream
Tssr88022	transcription start site region 88022	606 bp upstream
Tssr88023	transcription start site region 88023	1308 bp downstream