rs30673481 SNP Detail

Summary

• ID
  rs30673481
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:119352581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGCTAGA GGCTGGGGAG
  ATGATTTTGT TGGAAAAGCC CTTGATGTGC AAGCTTGAGG ACCTGAATTA AATCTCAAAC
  TCCCATGTAA AGATCCAGTT GTGGGGCTGT ATATCTGTAA TCCAAACACT GGAGGACAAG
  ACAAAAAGAT TCCTGGAGCT GCTGGCCAGC CTAAAAATAA GGTGGAGAGT AAGTAAGACA
  R
  CAAGAAGACA CTGACATTGT TTTCTGGTCT CTGTGTGTTA GTACACACAC ACACACACAC
  ACACACACAC ACGCACACGC ACACGCACAC GCACACGCAC ACAGAGATCA GGATGGGGAC
  GTAGATTTTC TTGCCTCCTG TGTGAAAGTC TCTGGGTTTG ATCTCCAGCA TTATGAGAAA
  GAAAGAAATA TAAGTAAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss46431483	mCV22975206	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs30673481					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119352581 () rs orientation: forward

Symbol	Name	Function Class
Macc1	metastasis associated in colon cancer 1	1552 bp upstream
Rr474302	regulatory region 474302	1786 bp distal
Rr474303	regulatory region 474303	1302 bp proximal
Rr474304	regulatory region 474304	1540 bp proximal
Tssr115574	transcription start site region 115574	1786 bp upstream
Tssr115575	transcription start site region 115575	1844 bp upstream