rs30673884 SNP Detail

Summary

• ID
  rs30673884
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71519776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTGGAGT GGTAGGAGGA
  AAGGGCTGGC TTGGTAGCAA ATAAACAAAT ACTCTGAAAA CAAACAAAAG TAAACAAACC
  CTCCCTCTGC ATGAGAACAA AATAACAGGG TATCCAACCA GTTCAGAATA AACCAATGGA
  CCATTGACAA AACACAAGGA AGGCCAAAGC TCAGAAGGAA TTCAGCATCC ACCTGAAGAC
  R
  CAGCACAGCC AGGCACAGAA CGCTTCATGT TCGTACCTGG TGCCCACCCG GGTGAAAGTG
  TGAATTAAAA TGGGCAAAGT GGATGGCAGG TGCCATAAGT ATGCCAGTTT AGTTCCTTTG
  TGTTTTAAAA GAGATTAGGA AACAAAAATC AGTAAAGGCC AAGGGAAGAG TCAGAGGAAT
  GGATGTGGAC AACATATCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47971084	NES11901936	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30673884					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47971084	NES11901936	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71519776 () rs orientation: forward

Symbol	Name	Function Class
1700040L08Rik	RIKEN cDNA 1700040L08 gene	400 bp downstream
Chmp3	charged multivesicular body protein 3	1044 bp upstream
Cpgi17526	CpG island 17526	950 bp proximal
Gm44194	predicted gene, 44194	1054 bp upstream
Rr399696	regulatory region 399696	875 bp upstream
Rr631970	regulatory region 631970	566 bp proximal
Rr631971	regulatory region 631971	1312 bp proximal
Tssr57031	transcription start site region 57031	1051 bp upstream
Tssr57032	transcription start site region 57032	1079 bp upstream
Tssr57033	transcription start site region 57033	1108 bp upstream
Tssr57034	transcription start site region 57034	1183 bp upstream
Tssr57035	transcription start site region 57035	1550 bp upstream