rs30673890 SNP Detail

Summary

• ID
  rs30673890
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71520169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATCACAT TCATGAATGA
  AATTCTCCAA CAATAACATT TTAAAAATAA TAAAGAAAAT TAGGAGTCTG ATTTCCTCTC
  CACCCAGCCA GTGGCCATAT TACAATTTAT AGAAAGCTAT GATATGAAAG CCAGAACATA
  TGCAGACTTA ACTGTAAGAT ATACTAACTG GTTCCTTCCC AGAGGGAATA GACAATGGAC
  S
  CAGGTTGCCT CTGTTCCATT AGAGAATATT TATGTTTATC ATTAAAGTTT CAGTAAAGAA
  AATAGGGTTT TTTTTAAAAA AGATTTCCCC GGTGTTTGTT TTTTAAAGGT AAGATGAGGC
  TGTAGAAGTG GCTTCCTGTT CTTCCAGGGG CCCAAGTTTC CTTGCACAGT TCCTTGTCTA
  TGAATCCATT TCTTTAATGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47971090	NES11901939	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	C	C	C	C	G	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30673890					SNP	C	C	G	C	C	C	C	C	C	G	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47971090	NES11901939	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71520169 () rs orientation: forward

Symbol	Name	Function Class
1700040L08Rik	RIKEN cDNA 1700040L08 gene	7 bp downstream
Chmp3	charged multivesicular body protein 3	651 bp upstream
Cpgi17526	CpG island 17526	557 bp proximal
Gm44194	predicted gene, 44194	1447 bp upstream
Rr399696	regulatory region 399696	482 bp upstream
Rr631970	regulatory region 631970	173 bp proximal
Rr631971	regulatory region 631971	919 bp proximal
Tssr57031	transcription start site region 57031	658 bp upstream
Tssr57032	transcription start site region 57032	686 bp upstream
Tssr57033	transcription start site region 57033	715 bp upstream
Tssr57034	transcription start site region 57034	790 bp upstream
Tssr57035	transcription start site region 57035	1157 bp upstream