rs30673969 SNP Detail

Summary

• ID
  rs30673969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29981037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTCCCCCCA CCCAAAAAAA ACCCCCAAAA AACAAAAACC
  AGCAACAACA AAAAAACCCA ACTGATTGAT CACCCAGACT CGGAACTGTA AGCTACAACC
  Y
  TAAACATTTC CGGGGCCAGT TTATATAGGG GGAAAAGGCA TAATGATCTG ATAAGTAGGT
  GCAGGGAGAG CTGCAGCGTG GTTGGCCTTC TCCTAAGTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46433101	mCV22974584	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	T
ss148672351	ENSMUSSNP6302903	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
ss322132954	CHEV_7_31066631	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30673969					SNP	C	C	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29981037 () rs orientation: forward

Symbol	Name	Function Class
1700020L13Rik	RIKEN cDNA 1700020L13 gene	within coordinates
Cpgi18786	CpG island 18786	592 bp distal
Rr400235	regulatory region 400235	1045 bp downstream
Tssr65667	transcription start site region 65667	1470 bp downstream
Tssr65668	transcription start site region 65668	1424 bp downstream
Tssr65669	transcription start site region 65669	1028 bp downstream
Tssr71721	transcription start site region 71721	1188 bp upstream
Wdr62	WD repeat domain 62	1193 bp upstream